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LRB
- Bioinformatics Tools
BoxshadeLite is an alignment
analyzer. It parses Clustal .aln files into various Boxshade
views.
- Pretty Alignment: CLUSTAL alignment viewed as a
continuous
string as opposed to block format
- Boxshade: Hightlights Base and Amino Acid differences
- Hypermutation List: Provides a list of the base number and
codon of each G to
A hypermutation.
- G to A Hypermutation Boxshade: Highlights G to A
transitions only
- A to G Hypermutation Boxshade: Highlights A to G
transitions only
HIV Envelope V3 Loop Viral Tropism
Predictor.
- A pairwise alignment is performed using the North American
V3 Loop consensus and the input Amino Acid sequence.
- A prediction is made based on the Charge Rule, which evaluates the
relative positions 11 and 25 of the input sequence for the positively
charged Amino Acids Lysine and Arginine. The V3 Loop sequence
is then predicted to be either SI X4 or NSI R5 type virus.
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